Schedule (tentative)

The complete ICIBM 2020 program is avaiable here. The following is a glance of the schedule.

ICIBM 2020 Day 1
Session Date (US EDT) Time (US EDT) Paper ID Paper Title Presenter Affiliation
Computational Genomics

Chairs: Jinchuan Xing, Wanding Zhou
8/9/2020 8:00-8:15am
Introduction Mindy Shi and Li Shen
8/9/2020 8:15-8:30am 13 Enhanced Co-expression Extrapolation (COXEN) Gene Selection Method for Building Anti-cancer Drug Response Prediction Models Yitan Zhu Argonne National Laboratory
8/9/2020 8:30-8:45am 15 Deep learning for HGT insertion sites recognition Chen Li City University of Hong Kong
8/9/2020 8:45-9:00am 70 Lilikoi V2: Deep-learning enabled, personalized pathway-based package for diagnosis and prognosis predictions using metabolomics data Xinying Fang, Yu Liu University of Michigan
8/9/2020 9:00-9:15am 27 Comprehensive network modeling of single cell RNA-seq data of human and mouse revealed that transcription regulation program of hematopoiesis is largely conserved across species Shouguo Gao National Institutes of Health
8/9/2020 9:15-9:30am 31 LongGF: computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing Yu Hu Children's Hospital of Philadelphia
8/9/2020 9:30-9:45am 36 Multivariate genome wide association and network analysis of subcortical imaging phenotypes in Alzheimer’s disease Xianglian Meng Changzhou institute of technology
8/9/2020 9:45-10:00am 57 A Linear Regression and Deep Learning Approach for Detecting Reliable Genetic Alterations in Cancer using DNA Methylation and Gene Expression Data Soumita Seth Aliah University, Kolkata, India
8/9/2020 10:00-10:15am 58 Template-based prediction of protein structure with deep-learning Haicang Zhang Columbia University
8/9/2020 10:15-10:30am 61 Predicting metabolic pathway membership with deep neural networks by integrating sequential and ontology information Imam Cartealy University of Delaware
8/9/2020 10:30-10:45am 22 Bioinformatics Analysis Revealed Novel 3’UTR Variants Associated with Intellectual Disability Junmeng (Jasmine) Yang Shanghai Starriver Bilingual School
8/9/2020 10:45-11:00am
Wrap up

Biomedical Informatics

Chairs: Zhandong Liu, Yunyun Zhou
8/9/2020 8:00-8:15pm
Introduction Mindy Shi and Li Shen
8/9/2020 8:15-8:30pm 14 Utilizing Deep Learning to Identify Drug Use on Twitter Data Joseph Tassone Lakehead University, Canada
8/9/2020 8:30-8:45pm 20 Stress Detection Using Deep Neural Networks Russell Li St. John's School
8/9/2020 8:45-9:00pm 63 Fingerprint Restoration using Cubic Bezier Curve Yilin Liu Zhuhai People's Hospital
8/9/2020 9:00-9:15pm 43 Unsupervised Phenotyping of Sepsis Using Non-negative Matrix Factorization on Temporal Trends from a Multivariate Panel of Physiological Measurements Menghan Ding Northwestern University Feinberg School of Medicine
8/9/2020 9:15-9:30pm 48 An Interpretable Risk Prediction Model for Healthcare with Pattern Attention Sundreen Asad Kamal Xi'an Jiaotong University
8/9/2020 9:30-9:45pm 50 Comparing Different Wavelet Transform on Removing Electrocardiogram Baseline Wanders and Special Trends Fuchiang (Rich) Tsui University of Pennsylvania and Children’s Hospital of Philadelphia
8/9/2020 9:45-10:00pm 59 In Silico Ranking of Phenolics for Therapeutic Effectiveness on Cancer Stem Cells Saurav Mallik Xavier University, Bhubaneswar, India
8/9/2020 10:00-10:15pm 60 SURF: Identifying and allocating resources duringOut-of-Hospital Cardiac Arrest Gaurav Rao Saint Mary's University, Canada
8/9/2020 10:15-10:30pm 62 Natural Language Processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder Jacqueline Peng University of Pennsylvania
8/9/2020 10:30-10:45pm 71 Identifying risk factors of preterm birth and perinatal mortality using statistical and machine learning approaches Parth Kothiya Indiana University Purdue University Indianapolis
8/9/2020 10:45-11:00pm
Wrap up

ICIBM 2020 Day 2
Session Date (US EDT) Time (US EDT) Paper ID Paper Title Presenter Affiliation
Genomics and Beyond

Chairs: Yan Guo, Wei Zhang
8/10/2020 8:00-8:15am
Introduction Mindy Shi and Li Shen
8/10/2020 8:15-8:30am 5 Pre-training of deep DNA sequence representation and its application to prediction of deoxyuridine sites for pan-cancer genome analysis Chaochen Wu Chinese Academy of Sciences
8/10/2020 8:30-8:45am 16 Alterations of kidney proteomic profiling revealed the molecular mechanisms of aristolochic acids nephrotoxicity Jingjing Liu Nanjing University of Aeronautics and Astronautics
8/10/2020 8:45-9:00am 17 Identifying Patient-Specific Flow Of Signal Transduction Based On Multiple Non-Synonymous Alterations Using Mutational Forks Formalism Olha Kholod University of Missouri-Columbia
8/10/2020 9:00-9:15am 39 Conditional transcriptional relationships may serve as cancer prognostic markers Hui Yu University of New Mexico
8/10/2020 9:15-9:30am 44 The circular RNA expression profile in ovarian serous cystadenocarcinoma revealing the circRNA-miRNA complex regulatory network Minhui Zhuang Nanjing University of Aeronautics and Astronautics
8/10/2020 9:30-9:45am 75 An adaptive method of defining negative mutation status for multi-sample comparison using next-generation sequencing Lei Wei Roswell Park Comprehensive Cancer Center
8/10/2020 9:45-10:00am 66 Integrative analysis of histopathological images and chromatin accessibility data for estrogen receptor-positive breast cancer Siwen Xu Indiana University School of Medicine
8/10/2020 10:00-10:15am 68 A pan-kidney cancer study identifies subtype specific perturbations on pathways with potential drivers in renal cell carcinoma Xiaohui Zhan Shenzhen University, Indiana University School of Medicine
8/10/2020 10:15-10:30am 72 Network-based Drug Sensitivity Prediction Khandakar Tanvir Ahmed University of Central Florida
8/10/2020 10:30-10:45am 49 Pinpointing miRNA and genes enrichment over trait-relevant tissue network in Genome-Wide Association Studies Binze Li Bellaire High School
8/10/2020 10:45-11:00am 3 Annotation and Extraction of Age and Temporally-Related Events from Clinical Histories Judy Hong University of Pennsylvania
8/10/2020 11:00-11:15am
Wrap up


Chairs: Xiaoming Liu, Jingwen Yan
8/10/2020 8:00-8:15pm
Introduction Mindy Shi and Li Shen
8/10/2020 8:15-8:30pm 10 Compositional zero-inflated network estimation for microbiome data Min Jin Ha University of Texas MD Anderson Cancer Center
8/10/2020 8:30-8:45pm 25 Clinical connectivity map for drug repurposing: using laboratory tests to bridge drugs and diseases Qianlong Wen The Ohio State University
8/10/2020 8:45-9:00pm 35 Genome-wide detection of short tandem repeat expansions by long-read sequencing Qian Liu Children's Hospital of Philadelphia
8/10/2020 9:00-9:15pm 37 Effect of APOE ε4 on Multimodal Brain Connectomic Traits: A Persistent Homology Study Chenyuan Bian Harbin Engineering University
8/10/2020 9:15-9:30pm 46 The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data Jessica Mar University of Queensland, Australia
8/10/2020 9:30-9:45pm 51 LDscaff: LD-based scaffolding of de novo genome assemblies Zicheng Zhao City University of Hong Kong
8/10/2020 9:45-10:00pm 53 Deep learning detection of informative features in tau PET for Alzheimer’s disease classification Taeho Jo Indiana University School of Medicine
8/10/2020 10:00-10:15pm 56 Auto3DCryoMap: An Automated Particle Alignment Approach for 3D cryo-EM Density Map Reconstruction Adil Al-Azzawi University of Missouri, Columbia
8/10/2020 10:15-10:30pm 67 TPSC: A Module Detection Method Based on Topology Potential and Spectral Clustering in Weighted Networks and Its Application in Gene Co-expression Module Discovery Yusong Liu Harbin Engineering University, Indiana University School of Medicine
8/10/2020 10:30-10:45pm 54 Identification of miRNA-related tumorigenesis variants and genes in TCGA data sets Jeff Zhao Marine Military Academy
8/10/2020 10:45-11:00pm
Wrap up